Overall
Plot

Individual metrics
Overall

Batch correction
Batch correction

PCR batch

Batch ASW

Graph iLISI

Graph connectivity

kBET

Bio conservation
Bio conservation

NMI cluster/label

ARI cluster/label

Label ASW

Isolated label F1

Isolated label silhouette

Graph cLISI

HVG conservation

Cell cycle conservation

Trajectory conservation

Embeddings
Full
Scaled
mini_pancreas (Features)

mini_sim (Features)

Unscaled
mini_pancreas (Features)

mini_sim (Features)

HVG
Scaled
mini_pancreas (Features)

mini_sim (Features)

Unscaled
mini_pancreas (Features)

mini_sim (Features)
